What’s that Strange Glowing Mold? Astronauts will Soon be Able to Sequence Unknown Space Organisms

Seeking to understand more about space-born microbes, NASA has initiated a program known as Genes in Space-3 – a collaborative effort that will prepare, sequence and identify unknown organisms, entirely from space. For those who might be thinking that this sounds a lot like the film Life – where astronauts revive an alien organism on the International Space Station and everyone dies! – rest assured, this is not the setup for some horror movie.

In truth, it represents a game-changing development that builds on recent accomplishments, where DNA was first synthesized by NASA astronaut Kate Rubin aboard the International Space Station in 2016. Looking ahead, the Genes in Space-3 program will allow astronauts aboard the ISS to collect samples of microbes and study them in-house, rather than having to send them back to Earth for analysis.

The previous experiments performed by Rubin – which were part of the Biomolecule Sequencer investigation – sought to demonstrate that DNA sequencing is feasible in an orbiting spacecraft. The Genes in Space-3 seeks to build on that by establishing a DNA sample-preparation process that would allow ISS crews to identify microbes, monitor crew health, and assist in the search for DNA-based life elsewhere in the Solar System.

NASA astronaut Kate Rubins became the first person to sequence DNA in space and sequenced more than a billion bases during her time aboard the ISS. Credits: NASA

As Sarah Wallace – a NASA microbiologist and the project’s Principal Investigator (PI) at the Johnson Space Center – said in a recent press release:

“We have had contamination in parts of the station where fungi was seen growing or biomaterial has been pulled out of a clogged waterline, but we have no idea what it is until the sample gets back down to the lab. On the ISS, we can regularly resupply disinfectants, but as we move beyond low-Earth orbit where the ability for resupply is less frequent, knowing what to disinfect or not becomes very important.”

Developed in partnership by NASA’s Johnson Space Center and Boeing (and sponsored by the ISS National Lab), this project brings together two previously spaceflight-tested molecular biology tools. First, there is miniPCR, a device which copies targeted pieces of DNA in a process known as Polymerase Chain Reaction (PCR) to create thousands of copies.

This device was developed as part of the student-designed Genes in Space competition, and was successfully tested aboard the ISS during the Genes in Space-1 experiment. Running from September to March of 2016, this experiment sought to test if the alterations to DNA and the weakening of the immune system (both of which happen during spaceflight) are in fact linked.

Student Anna-Sophia Boguraev, winner of the Genes in Space competition, is pictured with the miniPCR device. Credits: NASA

This test will be followed-up this summer with Genes in Space-2 experiment. Running from April to September, this experiment will measure how spaceflight affects telomeres – the protective caps on our chromosomes that are associated with cardiovascular disease and cancers.

The MinION, meanwhile, is a handheld device developed by Oxford Nanopore Technologies. Capable of analyzing DNA and RNA sequences, this technology allows for rapid analysis that is also portable and scalable. It has already been used here on Earth, and was successfully tested aboard the ISS as part of the Biomolecule Sequencer investigation earlier this year.

Combined with some additional enzymes to demonstrate DNA amplification, the Genes in Space-3 experiment will allow astronauts to bring the lab to the microorganisms, rather than the reverse. This will consist of crew members collecting samples from within the space station and then culturing them aboard the orbiting laboratory. The samples will then be prepared for sequencing using the miniPCR and sequenced and identified using the MinION.

As Sarah Stahl, a microbiologist and project scientist, explained, this will allow crews to combat the spread of infectious diseases and bacteria. “The ISS is very clean,” she said. “We find a lot of human-associated microorganisms – a lot of common bacteria such as Staphylococcus and Bacillus and different types of familiar fungi like Aspergillus and Penicillium.”

In addition to being able to diagnose illnesses and infections in real-time, the experiment will allow for new and exciting research aboard the ISS. This could include identifying DNA-based life on other planets, the samples of which would be returned to the ISS via probe. In addition, if and hen microbes are found floating around in space, they could be returned to the ISS for swift analysis.

Another benefit of the program will come from Earth-based scientists being able to access the experiments going on aboard the ISS in real-time. And scientists here on Earth will also benefit from the tools being employed, which will allow for cheap and effective ways to diagnose viruses, especially in parts of the world where access to a laboratory is not possible.

Once more, the development of systems and tools for use in space – an environment that is not typically conducive to Earth-based technologies – is offering up applications that go far beyond space travel. And in the coming years, ISS-based genetic research could help in the ongoing search for extra-terrestrial life, as well as provide new insights into theories like panspermia (i.e. the cosmos being seeded with life by comets, asteroids and planetoids).

Be sure to enjoy this video titled “Cosmic Carpool”, courtesy of NASA’s Johnson Space Center:

Further Reading: NASA

Will We Contaminate Europa?

Europa is probably the best place in the Solar System to go searching for life. But before they’re launched, any spacecraft we send will need to be squeaky clean so don’t contaminate the place with our filthy Earth bacteria.
Continue reading “Will We Contaminate Europa?”

Why Earth’s Spores Could Survive A Trip to Mars

Here’s a finding to give planetary protectionists pause: two species of spores mounted on the International Space Station’s hull a few years back showed a high survival rate after 18 months in space.

Providing that they are shielded against solar radiation, it appears the spores are quite hardy and could easily transport on a spacecraft headed for Mars — which is concerning since so many scientific investigations there these days are focused on habitability of Martian life (whether past or present). The experiment was published in 2012, but highlighted in a recent NASA press release about planetary protection.

The experiment was called PROTECT (an acronym of Resistance of spacecraft isolates to outer space for planetary protection purposes) and studied spores of Bacillus subtilis 168 and Bacillus pumilus SAFR-032. B. pumilus spores were found in an air lock between a “clean room” and entrance floor at NASA’s Jet Propulsion Laboratory, and in previous studies were shown to be more resistant to UV radiation and hydrogen peroxide than “wild” strains. B. subtilis is a spore that has been studied in other space environment experiments.

Samples of both spores were mounted on the EXPOSE-E facility on the space station, which provides up to two years of space exposure. The major goal of this European Space Agency experiment is to study “the origin, evolution and distribution of life in the universe,” NASA states, adding that anything mounted outside of there has to survive “cosmic radiation, vacuum, full-spectrum solar light including UV-C, freezing/thawing cycles [and] microgravity.”

The European Technology Exposure Facility (EuTEF) attached to the Columbus module of the International Space Station. Credit: DLR, Institute of Aerospace Medicine/Dr. Gerda Horneck
The European Technology Exposure Facility (EuTEF) attached to the Columbus module of the International Space Station. Credit: DLR, Institute of Aerospace Medicine/Dr. Gerda Horneck

The experiment found that if the spores were in areas replete with solar UV radiation, most of them were killed. If those rays were filtered out, however, the spores showed a 50 percent survival rate on both space and simulated “Mars” conditions. It is most concerning to scientists when considering a situation where spores could be hiding underneath each other during a spacecraft trip. The ones on the outside would likely die, but the ones on the inside — shielded from solar radiation — could make it there.

One key limitation in this study, however, is that only two types of spores were studied. This does present a case for doing more studies on this matter in the future, however. Space agencies are quite aware of the problem of planetary protection, as evidenced by departments such as NASA’s Office of Planetary Protection and ESA’s Planetary Protection Officer.

Spacecraft designers constantly make decisions to keep the extraterrestrial bodies we study as safe from Earth contamination as possible; one famous example was when the Galileo probe was deliberately sent into Jupiter in 2003 to protect Europa and other potentially life-bearing moons of the giant planet from possible contamination.

Images of Bacillus pumilus SAFR-032 spores (seen in an electron micrograph) on aluminum before and after being exposed to space on an International Space Station experiment. Credit: P. Vaishampayan, et al./Astrobiology
Images of Bacillus pumilus SAFR-032 spores (seen in an electron micrograph) on aluminum before and after being exposed to space on an International Space Station experiment. Credit: P. Vaishampayan, et al./Astrobiology

You can read the entire study (led by DLR’s Gerda Horneck) in Astrobiology. Also note that there are two other EXPOSE-E studies published around the same time: “Survival of Rock-Colonizing Organisms After 1.5 Years in Outer Space” and “Survival of Bacillus pumilus Spores for a Prolonged Period of Time in Real Space Conditions.”

The rock study (led by Tuscia University’s Silvano Onofri) takes the question of the spores in a different direction, which is examining the phenomenon of “lithopanspermia” — how organisms might move between planets (say, on a meteor). Since Mars meteorites have been found on Earth, some researchers have wondered if life could have spread between our two planets. If that were to happen, the researchers cautioned, the spores would have to survive for thousands or millions of years.

The other B. pumilus paper (led by NASA’s Parag A. Vaishampayan) noted that those spores mounted outside of the space station that survived, showed higher concentrations of proteins that could be linked to resisting UV radiation.

In an Isolated, Ice-Covered Antarctic Lake Far Below Freezing, Life is Found

Lake Vida lies within one of Antarctica’s cold, arid McMurdo Dry Valleys (Photo: Desert Research Institute)

Even inside an almost completely frozen lake within Antarctica’s inland dry valleys, in dark, salt-laden and sub-freezing water full of nitrous oxide, life thrives… offering a clue at what might one day be found in similar environments elsewhere in the Solar System.


Researchers from NASA, the Desert Research Institute in Nevada, the University of Illinois at Chicago and nine other institutions have discovered colonies of bacteria living in one of the most isolated places on Earth: Antarctica’s Lake Vida, located in Victoria Valley — one of the southern continent’s incredibly arid McMurdo Dry Valleys.

These organisms seem to be thriving despite the harsh conditions. Covered by 20 meters (65 feet) of ice, the water in  Lake Vida is six times saltier than seawater and contains the highest levels of nitrous oxide ever found in a natural body of water. Sunlight doesn’t penetrate very far below the frozen surface, and due to the hypersaline conditions and pressure of the ice water temperatures can plunge to a frigid -13.5 ºC (8 ºF).

Yet even within such a seemingly inhospitable environment Lake Vida is host to a “surprisingly diverse and abundant assemblage of bacteria” existing within water channels branching through the ice, separated from the sun’s energy and isolated from exterior influences for an estimated 3,000 years.

Originally thought to be frozen solid, ground penetrating radar surveys in 1995 revealed a very salty liquid layer (a brine) underlying the lake’s year-round 20-meter-thick ice cover.

“This study provides a window into one of the most unique ecosystems on Earth,” said Dr. Alison Murray, one of the lead authors of the team’s paper, a molecular microbial ecologist and polar researcher and a member of 14 expeditions to the Southern Ocean and Antarctic continent. “Our knowledge of geochemical and microbial processes in lightless icy environments, especially at subzero temperatures, has been mostly unknown up until now. This work expands our understanding of the types of life that can survive in these isolated, cryoecosystems and how different strategies may be used to exist in such challenging environments.”

Sterile environments had to be set up within tents on Lake Vida’s surface so the researchers could be sure that the core samples they were drilling were pristine, and weren’t being contaminated with any introduced organisms.

According to a NASA press release, “geochemical analyses suggest chemical reactions between the brine and the underlying iron-rich sediments generate nitrous oxide and molecular hydrogen. The latter, in part, may provide the energy needed to support the brine’s diverse microbial life.”

“This system is probably the best analog we have for possible ecosystems in the subsurface waters of Saturn’s moon Enceladus and Jupiter’s moon Europa.”

– Chris McKay, co-author, NASA’s Ames Research Center

What’s particularly exciting is the similarity between conditions found in ice-covered Antarctic lakes and those that could be found on other worlds in our Solar System. If life could survive in Lake Vida, as harsh and isolated as it is, could it also be found beneath the icy surface of Europa, or within the (hypothesized) subsurface oceans of Enceladus? And what about the ice caps of Mars? Might there be similar channels of super-salty liquid water running through Mars’ ice, with microbes eking out an existence on iron sediments?

“It’s plausible that a life-supporting energy source exists solely from the chemical reaction between anoxic salt water and the rock,” explained Dr. Christian Fritsen, a systems microbial ecologist and Research Professor in DRI’s Division of Earth and Ecosystem Sciences and co-author of the study.

“If that’s the case,” Murray added, “this gives us an entirely new framework for thinking of how life can be supported in cryoecosystems on earth and in other icy worlds of the universe.”

Read more: Europa’s Hidden Great Lakes May Harbor Life

More research is planned to study the chemical interactions between the sediment and the brine as well as the genetic makeup of the microbial communities themselves.

The research was published this week in the Proceedings of the National Academy of Science (PNAS). Read more on the DRI press release here, and watch a video below showing highlights from the field research.

Funding for the research was supported jointly by NSF and NASA. Images courtesy the Desert Research Institute. Dry valley image credit: NASA/Landsat. Europa image: NASA/Ted Stryk.)

On The Hunt For High-Altitude Microorganisms

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The United States Rocket Academy has announced an open call for entries in its High Altitude Astrobiology Challenge, a citizen science project that will attempt to collect samples of microbes that may be lurking in Earth’s atmosphere at the edge of space.

Earth’s biosphere has been discovered to extend much higher than once thought — up to 100,000 feet (30,480 meters) above the planet’s surface. Any microorganisms present at these high altitudes could be subject to the mutating effects of increased radiation and transported around the globe in a sort of pathogenic jet-stream.

What sort of microbes may exist at the upper reaches of the atmosphere?

Citizens in Space, a project run by the U.S. Rocket Academy, is offering a $10,000 prize for the development of an open-source and replicable  collection device that could successfully retrieve samples of high-altitude microorganisms, and could fly as a payload aboard an XCOR Lynx spacecraft.

XCOR Aerospace is a private California-based company that has developed the Lynx, a reusable launch vehicle that has suborbital flight capabilities. Low-speed test flights are expected to commence later this year, with incremental testing to take place over the following months.

Any proposed microbe collection devices would have to fit within the parameters of the Lynx’s 2kg Aft Cowling Port payload capabilities — preferably a 10 x 10 x 20 cm CubeSat volume — and provide solutions for either its retraction (in the case of extended components) or retrieval (in the case of ejected hardware.)

The contest is open to any US resident or non-government team or organization, and submissions are due by February 13, 2013. The chosen design will fly on 10 contracted Lynx flights in late 2013 or early 2014, and possibly even future missions.

Find out more about the challenge on the Citizens in Space site here, and check out an animation of the XCOR Lynx spacecraft below: